Variant report

Variant	rs1336632
Chromosome Location	chr6:69823956-69823957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10945151	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11752858	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1384248	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1482324	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17402611	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3799037	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4706854	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6913677	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9354814	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9354815	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3849	chr6:69818249-69825384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69821400-69826400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69821400-69832200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69822000-69831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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