Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10455681	1.00[JPT][hapmap]
rs10455682	1.00[JPT][hapmap]
rs10945151	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11752858	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1336632	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1384248	0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs1482323	0.85[CEU][hapmap]
rs1482324	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17402611	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2785576	0.85[CEU][hapmap]
rs3799027	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4554293	0.85[CEU][hapmap]
rs4706854	0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs526898	0.85[CEU][hapmap];0.84[GIH][hapmap]
rs634371	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs688606	0.89[JPT][hapmap]
rs6913677	0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs7759645	1.00[JPT][hapmap]
rs779017	0.85[CEU][hapmap]
rs9354814	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9354815	0.92[ASN][1000 genomes]
rs9363983	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3849	chr6:69818249-69825384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3799037	MGC14436	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69820400-69822400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69820600-69821400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69820600-69822400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69820800-69822000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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