Variant report

Variant	rs10455681
Chromosome Location	chr6:69802502-69802503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10455682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945151	1.00[JPT][hapmap]
rs11752858	1.00[JPT][hapmap]
rs1336654	1.00[YRI][hapmap]
rs1384248	1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1482324	1.00[JPT][hapmap]
rs1482325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402611	1.00[JPT][hapmap]
rs3757049	1.00[YRI][hapmap]
rs3798997	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs3799019	1.00[MKK][hapmap]
rs3799027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3799037	1.00[JPT][hapmap]
rs3799048	1.00[YRI][hapmap]
rs3823070	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4706854	1.00[JPT][hapmap];0.84[MEX][hapmap]
rs676505	0.93[GIH][hapmap]
rs688606	0.94[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs6913677	1.00[JPT][hapmap];0.84[MEX][hapmap]
rs7759645	0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs779460	1.00[YRI][hapmap]
rs779463	1.00[YRI][hapmap]
rs779484	0.84[MKK][hapmap];1.00[YRI][hapmap]
rs9354814	1.00[JPT][hapmap]
rs9354826	1.00[YRI][hapmap]
rs9360369	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9363983	0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9446089	0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69794800-69802800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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