Variant report

Variant	rs1482325
Chromosome Location	chr6:69806978-69806979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10455681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455682	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799027	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823070	0.85[AFR][1000 genomes]
rs7759645	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9363983	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69804800-69807400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69805400-69808200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69806400-69807000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:69806400-69807400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:69806600-69807000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:69806600-69807000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:69806600-69807000	Enhancers	Fetal Heart	heart
10	chr6:69806600-69807200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:69806600-69807200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:69806600-69807200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:69806600-69807200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:69806800-69808000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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