Variant report

Variant	rs3823070
Chromosome Location	chr6:69794037-69794038
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10455681	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10455682	1.00[YRI][hapmap]
rs1336654	1.00[YRI][hapmap]
rs1482325	0.85[AFR][1000 genomes]
rs3757049	1.00[YRI][hapmap]
rs3798997	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs3799019	1.00[MKK][hapmap]
rs3799027	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs3799048	1.00[YRI][hapmap]
rs688606	0.84[MKK][hapmap];1.00[YRI][hapmap]
rs779460	1.00[YRI][hapmap]
rs779463	1.00[YRI][hapmap]
rs779484	0.84[MKK][hapmap];1.00[YRI][hapmap]
rs9354826	1.00[YRI][hapmap]
rs9360369	1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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