Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10455681	0.94[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs10455682	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10945151	0.89[JPT][hapmap]
rs11752858	0.89[JPT][hapmap]
rs1336654	1.00[YRI][hapmap]
rs1384248	0.89[JPT][hapmap]
rs1482324	0.89[JPT][hapmap]
rs17402611	0.89[JPT][hapmap]
rs3757049	1.00[YRI][hapmap]
rs3798997	0.84[MKK][hapmap]
rs3799019	0.84[MKK][hapmap]
rs3799027	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs3799037	0.89[JPT][hapmap]
rs3799048	1.00[YRI][hapmap]
rs3823070	0.84[MKK][hapmap];1.00[YRI][hapmap]
rs4706854	0.89[JPT][hapmap]
rs676505	0.93[GIH][hapmap]
rs6913677	0.89[JPT][hapmap]
rs7759645	0.82[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs779460	1.00[YRI][hapmap]
rs779463	1.00[YRI][hapmap]
rs779484	1.00[YRI][hapmap]
rs9354814	0.89[JPT][hapmap]
rs9354826	1.00[YRI][hapmap]
rs9360369	0.81[MKK][hapmap];1.00[YRI][hapmap]
rs9363983	0.82[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs9446089	0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs688606	COL9A1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69783800-69784400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain

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