Variant report

Variant	rs779017
Chromosome Location	chr6:69771582-69771583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1007921	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12194774	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12194946	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12213405	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1336634	1.00[JPT][hapmap]
rs1336651	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1384246	1.00[JPT][hapmap]
rs1415029	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1415036	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs1482323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842743	1.00[JPT][hapmap]
rs1889877	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1889878	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2005033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2128290	1.00[JPT][hapmap]
rs2170508	1.00[JPT][hapmap]
rs2170509	1.00[JPT][hapmap]
rs2200088	1.00[JPT][hapmap]
rs2210867	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2225803	1.00[JPT][hapmap]
rs2785576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793459	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35797298	0.85[ASN][1000 genomes]
rs3734465	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3757051	1.00[JPT][hapmap]
rs3799002	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs3799007	1.00[JPT][hapmap]
rs3799017	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs3799021	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3799023	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3799028	1.00[JPT][hapmap]
rs3799030	1.00[JPT][hapmap]
rs3799037	0.85[CEU][hapmap]
rs3799039	1.00[JPT][hapmap]
rs3823067	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs4554293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs484935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485864	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509043	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526898	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527872	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs557184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570181	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs602406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62416781	0.90[ASN][1000 genomes]
rs62416782	0.90[ASN][1000 genomes]
rs62416803	0.95[ASN][1000 genomes]
rs629082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634371	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs634695	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455309	1.00[JPT][hapmap]
rs653895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs677389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904267	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6930865	1.00[JPT][hapmap]
rs693242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739849	1.00[JPT][hapmap]
rs7743332	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756040	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756358	1.00[JPT][hapmap]
rs7756637	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7760307	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7764479	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7767118	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9342740	1.00[JPT][hapmap]
rs9346261	1.00[JPT][hapmap]
rs9360371	1.00[JPT][hapmap]
rs9360372	1.00[JPT][hapmap]
rs9446085	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9454674	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9454683	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9454695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964664	1.00[JPT][hapmap]
rs994381	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3367046	chr6:69771492-69772889	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69770000-69775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69771000-69772200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:69771400-69776400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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