Variant report

Variant	rs6455309
Chromosome Location	chr6:69821600-69821601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1007921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12194774	1.00[JPT][hapmap]
rs12194946	1.00[JPT][hapmap]
rs12213405	1.00[JPT][hapmap]
rs13191240	1.00[CHB][hapmap]
rs13205016	0.92[GIH][hapmap]
rs1336634	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1336651	1.00[JPT][hapmap]
rs1384246	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1384247	0.80[ASN][1000 genomes]
rs1415029	1.00[JPT][hapmap]
rs1415036	1.00[JPT][hapmap]
rs1482323	1.00[JPT][hapmap]
rs16900526	0.85[CEU][hapmap]
rs1842743	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1889877	1.00[JPT][hapmap]
rs1889878	1.00[JPT][hapmap]
rs2128290	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2170508	0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2170509	0.83[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2200088	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2210867	1.00[JPT][hapmap]
rs2225803	1.00[JPT][hapmap]
rs2785576	1.00[JPT][hapmap]
rs2793459	1.00[JPT][hapmap]
rs3734465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs3757045	1.00[CHB][hapmap]
rs3757051	1.00[JPT][hapmap]
rs3798980	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs3798996	0.84[GIH][hapmap]
rs3799002	1.00[JPT][hapmap]
rs3799007	0.82[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs3799017	1.00[JPT][hapmap]
rs3799021	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs3799023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs3799028	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3799030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3799039	1.00[JPT][hapmap]
rs3823061	1.00[CHB][hapmap]
rs3823067	1.00[JPT][hapmap]
rs4554293	1.00[JPT][hapmap]
rs4706857	0.80[ASN][1000 genomes]
rs524359	1.00[JPT][hapmap]
rs557184	1.00[JPT][hapmap]
rs55776408	0.81[AFR][1000 genomes]
rs570181	1.00[JPT][hapmap]
rs602406	1.00[JPT][hapmap]
rs61648927	0.81[AFR][1000 genomes]
rs62406773	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62406782	0.87[AFR][1000 genomes]
rs62406785	0.81[AFR][1000 genomes]
rs62406794	0.81[AFR][1000 genomes]
rs62406800	0.81[AFR][1000 genomes]
rs62416781	0.86[AMR][1000 genomes]
rs62416782	0.86[AMR][1000 genomes]
rs62416803	0.86[AMR][1000 genomes]
rs62416807	0.86[AMR][1000 genomes]
rs634695	1.00[JPT][hapmap]
rs635863	1.00[JPT][hapmap]
rs653895	1.00[JPT][hapmap]
rs6904267	1.00[JPT][hapmap]
rs6908180	0.84[GIH][hapmap]
rs6930865	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7739849	1.00[JPT][hapmap]
rs7743332	1.00[JPT][hapmap]
rs7756040	1.00[JPT][hapmap]
rs7756358	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7756637	1.00[JPT][hapmap]
rs7760307	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7761270	0.84[GIH][hapmap]
rs7764479	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7767118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs779017	1.00[JPT][hapmap]
rs9342740	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9346261	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9354816	0.83[ASN][1000 genomes]
rs9360371	0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9360372	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9446085	1.00[JPT][hapmap]
rs9454674	1.00[JPT][hapmap]
rs9454687	0.80[ASN][1000 genomes]
rs9454695	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs964664	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs994380	0.80[ASN][1000 genomes]
rs994381	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3849	chr6:69818249-69825384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69820400-69822400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69820600-69822400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:69820800-69822000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69821000-69822200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:69821400-69823000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:69821400-69826400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69821400-69832200	Weak transcription	Brain Hippocampus Middle	brain

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