Variant report

Variant	rs3823061
Chromosome Location	chr6:69667472-69667473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1007921	1.00[CHB][hapmap]
rs10485436	0.86[MEX][hapmap];1.00[YRI][hapmap]
rs13191240	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13191563	1.00[JPT][hapmap]
rs13191706	0.94[ASN][1000 genomes]
rs13194716	0.94[ASN][1000 genomes]
rs13197569	1.00[JPT][hapmap]
rs13205016	1.00[JPT][hapmap]
rs13205140	1.00[JPT][hapmap]
rs13207774	0.86[MEX][hapmap];0.87[YRI][hapmap]
rs13219339	1.00[JPT][hapmap]
rs13219669	1.00[JPT][hapmap]
rs16900400	1.00[JPT][hapmap]
rs1932618	0.94[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2200088	1.00[JPT][hapmap]
rs34526480	0.94[ASN][1000 genomes]
rs34617600	1.00[ASN][1000 genomes]
rs3734465	1.00[CHB][hapmap]
rs3757045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3798978	1.00[ASN][1000 genomes]
rs3798980	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3798996	0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs3799021	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs3799023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3799030	1.00[CHB][hapmap]
rs6455309	1.00[CHB][hapmap]
rs6903686	1.00[JPT][hapmap]
rs6908180	0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6919909	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6934473	1.00[JPT][hapmap]
rs71555397	0.94[ASN][1000 genomes]
rs7760307	1.00[CHB][hapmap]
rs7761270	0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7764479	1.00[CHB][hapmap]
rs7767118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9360367	0.84[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
7	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69659600-69669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:69665000-69667600	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69665200-69667600	Weak transcription	Fetal Stomach	stomach
12	chr6:69665800-69668000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:69666800-69672800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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