Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1008234	0.88[JPT][hapmap]
rs1018436	0.88[JPT][hapmap]
rs10223798	0.88[JPT][hapmap]
rs10485434	0.88[JPT][hapmap]
rs10485436	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.82[ASN][1000 genomes]
rs10485437	0.88[JPT][hapmap]
rs11751644	0.84[JPT][hapmap]
rs13191240	0.87[YRI][hapmap]
rs13201188	0.88[JPT][hapmap]
rs13204176	0.84[JPT][hapmap]
rs13204246	0.86[JPT][hapmap]
rs13210533	0.88[JPT][hapmap]
rs13215030	0.88[JPT][hapmap]
rs13217051	0.88[JPT][hapmap]
rs17200696	0.88[JPT][hapmap]
rs1889879	0.95[CHD][hapmap];0.86[JPT][hapmap]
rs1916767	0.86[JPT][hapmap]
rs1916768	0.88[JPT][hapmap]
rs1932615	0.88[JPT][hapmap]
rs1932618	0.95[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs2184723	0.88[JPT][hapmap]
rs36051509	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3823061	0.86[MEX][hapmap];0.87[YRI][hapmap]
rs6455307	0.88[JPT][hapmap]
rs6908180	0.86[MEX][hapmap]
rs6919909	0.82[MEX][hapmap];0.87[YRI][hapmap]
rs7755226	0.88[JPT][hapmap]
rs7760666	0.88[JPT][hapmap]
rs7761270	0.82[MEX][hapmap]
rs9294813	0.88[JPT][hapmap]
rs9360367	0.86[JPT][hapmap]
rs9454643	0.88[JPT][hapmap]
rs9454645	0.88[JPT][hapmap]
rs996768	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69556600-69562400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69557400-69566800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: