Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69631911..69634740-chr6:69647956..69650887,2	K562	blood:
2	chr6:69648515..69651430-chr6:69656581..69658381,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485436	0.82[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs13191240	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13191563	1.00[JPT][hapmap]
rs13197569	1.00[JPT][hapmap]
rs13205016	1.00[JPT][hapmap]
rs13205140	1.00[JPT][hapmap]
rs13207774	0.82[MEX][hapmap];0.87[YRI][hapmap]
rs13219339	1.00[JPT][hapmap]
rs13219669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16900400	1.00[JPT][hapmap]
rs1932618	0.82[MEX][hapmap]
rs2200088	1.00[JPT][hapmap]
rs3757045	1.00[JPT][hapmap]
rs3798980	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs3798996	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs3799021	0.81[CHD][hapmap]
rs3799023	1.00[JPT][hapmap]
rs3823061	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6903686	1.00[JPT][hapmap]
rs6908180	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6934473	1.00[JPT][hapmap]
rs7761270	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7767118	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69645200-69653600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
6	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
7	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
8	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69647600-69659200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69647600-69659200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain

Quick Search: