Variant report

Variant	rs3799023
Chromosome Location	chr6:69774810-69774811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1007921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12194774	1.00[JPT][hapmap]
rs12194946	1.00[JPT][hapmap]
rs12213405	1.00[JPT][hapmap]
rs13191240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13191563	1.00[JPT][hapmap]
rs13191706	1.00[JPT][hapmap]
rs13192798	0.81[ASN][1000 genomes]
rs13197569	1.00[JPT][hapmap]
rs13205016	1.00[JPT][hapmap]
rs13205140	1.00[JPT][hapmap]
rs13219339	1.00[JPT][hapmap]
rs13219669	1.00[JPT][hapmap]
rs1336634	1.00[JPT][hapmap]
rs1336651	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1336655	0.81[ASN][1000 genomes]
rs1384246	1.00[JPT][hapmap]
rs1415029	1.00[JPT][hapmap]
rs1415036	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1482323	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16900400	1.00[JPT][hapmap]
rs1842743	1.00[JPT][hapmap]
rs1889877	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1889878	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2005033	0.86[ASN][1000 genomes]
rs2128290	1.00[JPT][hapmap]
rs2170508	1.00[JPT][hapmap]
rs2170509	1.00[JPT][hapmap]
rs2200088	1.00[JPT][hapmap]
rs2210867	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2225803	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2343396	0.81[ASN][1000 genomes]
rs2785576	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2793459	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs35797298	0.89[ASN][1000 genomes]
rs3734465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3757046	0.81[ASN][1000 genomes]
rs3757047	0.81[ASN][1000 genomes]
rs3757051	1.00[JPT][hapmap]
rs3798980	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3798996	1.00[JPT][hapmap]
rs3799002	1.00[JPT][hapmap]
rs3799007	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3799016	0.81[ASN][1000 genomes]
rs3799017	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3799021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799028	1.00[JPT][hapmap]
rs3799030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3799039	1.00[JPT][hapmap]
rs3823061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3823066	0.81[ASN][1000 genomes]
rs3823067	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4554293	1.00[JPT][hapmap]
rs484935	0.95[ASN][1000 genomes]
rs485864	0.95[ASN][1000 genomes]
rs509043	0.95[ASN][1000 genomes]
rs524359	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs526898	0.95[ASN][1000 genomes]
rs527872	0.95[ASN][1000 genomes]
rs530694	0.82[ASN][1000 genomes]
rs557184	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs570181	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs602406	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs62406773	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62416781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416807	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs629082	0.95[ASN][1000 genomes]
rs634695	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs635863	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6455309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs653895	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs677389	0.95[ASN][1000 genomes]
rs6903686	1.00[JPT][hapmap]
rs6904267	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6908180	1.00[JPT][hapmap]
rs6919909	1.00[JPT][hapmap]
rs6930865	1.00[JPT][hapmap]
rs693242	0.95[ASN][1000 genomes]
rs6934473	1.00[JPT][hapmap]
rs7739849	1.00[JPT][hapmap]
rs7741493	0.81[ASN][1000 genomes]
rs7743332	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7756040	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7756358	1.00[JPT][hapmap]
rs7756637	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7760307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7761270	1.00[JPT][hapmap]
rs7764479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7767118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs779017	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9342740	1.00[JPT][hapmap]
rs9346261	1.00[JPT][hapmap]
rs9360371	1.00[JPT][hapmap]
rs9360372	1.00[JPT][hapmap]
rs9446085	1.00[JPT][hapmap]
rs9454674	1.00[JPT][hapmap]
rs9454695	1.00[JPT][hapmap]
rs947221	0.81[ASN][1000 genomes]
rs964664	1.00[JPT][hapmap]
rs994381	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69770000-69775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69771400-69776400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:69773200-69775200	Enhancers	A549	lung
6	chr6:69774400-69775200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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