Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69676667..69679065-chr6:69686722..69689222,2	K562	blood:
2	chr6:69676667..69679537-chr6:69686722..69688400,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12194774	0.80[ASN][1000 genomes]
rs12194946	0.80[ASN][1000 genomes]
rs12213405	0.80[ASN][1000 genomes]
rs13191240	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13191563	0.85[ASN][1000 genomes]
rs13194716	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197569	0.85[ASN][1000 genomes]
rs13205016	0.85[ASN][1000 genomes]
rs13205140	0.85[ASN][1000 genomes]
rs13219339	0.85[ASN][1000 genomes]
rs1336635	0.80[ASN][1000 genomes]
rs1336636	0.80[ASN][1000 genomes]
rs1415029	0.80[ASN][1000 genomes]
rs1556756	0.80[ASN][1000 genomes]
rs2200088	1.00[JPT][hapmap]
rs34470831	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34526480	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617600	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757045	1.00[ASN][1000 genomes]
rs3798978	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798980	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798996	0.85[ASN][1000 genomes]
rs3799002	0.80[ASN][1000 genomes]
rs3799007	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3799023	1.00[JPT][hapmap]
rs3823061	0.94[ASN][1000 genomes]
rs6903686	0.85[ASN][1000 genomes]
rs6908180	0.85[ASN][1000 genomes]
rs6934473	0.85[ASN][1000 genomes]
rs71555397	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761270	0.85[ASN][1000 genomes]
rs7767118	1.00[JPT][hapmap]
rs9454674	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3368681	chr6:69682552-69687715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603620	chr6:69684850-69691596	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69685800-69687200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
5	chr6:69686000-69695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69686000-69700000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:69686200-69687600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69686200-69695200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69686600-69700200	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung

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