Variant report

Variant	rs3798980
Chromosome Location	chr6:69681677-69681678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1007921	1.00[CHB][hapmap]
rs12213405	0.89[CHD][hapmap]
rs13191240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191563	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs13191706	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13194716	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13197569	1.00[JPT][hapmap]
rs13205016	0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs13205140	1.00[JPT][hapmap]
rs13208283	1.00[MEX][hapmap]
rs13219339	1.00[JPT][hapmap]
rs13219669	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1415029	0.89[CHD][hapmap]
rs16900400	1.00[JPT][hapmap]
rs1889877	0.81[CHD][hapmap]
rs1889878	0.89[CHD][hapmap]
rs1932618	0.81[GIH][hapmap]
rs2170509	0.81[CHD][hapmap]
rs2200088	1.00[JPT][hapmap]
rs2210867	0.81[CHD][hapmap]
rs2225803	0.89[CHD][hapmap]
rs34470831	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34526480	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34617600	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734465	1.00[CHB][hapmap]
rs3757045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3798978	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798996	0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs3799007	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3799017	0.89[CHD][hapmap]
rs3799021	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs3799023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3799030	1.00[CHB][hapmap]
rs3823061	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs526898	0.89[CHD][hapmap]
rs6455309	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs6903686	1.00[JPT][hapmap]
rs6904267	0.81[CHD][hapmap]
rs6908180	0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs6919909	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6934473	1.00[JPT][hapmap]
rs71555397	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743332	0.89[CHD][hapmap]
rs7756040	0.89[CHD][hapmap]
rs7760307	1.00[CHB][hapmap]
rs7761270	0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs7764479	1.00[CHB][hapmap]
rs7767118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9446085	0.89[CHD][hapmap]
rs9454674	0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69681000-69684200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69681600-69682800	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links