Variant report

Variant	rs62416803
Chromosome Location	chr6:69766783-69766784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69762133..69764626-chr6:69765219..69767879,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1007921	0.81[ASN][1000 genomes]
rs13192798	0.81[ASN][1000 genomes]
rs1336651	0.81[ASN][1000 genomes]
rs1336655	0.81[ASN][1000 genomes]
rs1415036	0.81[ASN][1000 genomes]
rs1482323	0.95[ASN][1000 genomes]
rs1889877	0.81[ASN][1000 genomes]
rs1889878	0.81[ASN][1000 genomes]
rs2005033	0.86[ASN][1000 genomes]
rs2210867	0.81[ASN][1000 genomes]
rs2225803	0.81[ASN][1000 genomes]
rs2343396	0.81[ASN][1000 genomes]
rs2785576	0.95[ASN][1000 genomes]
rs2793459	0.95[ASN][1000 genomes]
rs35797298	0.89[ASN][1000 genomes]
rs3734465	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757046	0.81[ASN][1000 genomes]
rs3757047	0.81[ASN][1000 genomes]
rs3799007	0.81[ASN][1000 genomes]
rs3799016	0.81[ASN][1000 genomes]
rs3799017	0.81[ASN][1000 genomes]
rs3799021	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799030	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3823066	0.81[ASN][1000 genomes]
rs3823067	0.81[ASN][1000 genomes]
rs484935	0.95[ASN][1000 genomes]
rs485864	0.95[ASN][1000 genomes]
rs509043	0.95[ASN][1000 genomes]
rs524359	0.95[ASN][1000 genomes]
rs526898	0.95[ASN][1000 genomes]
rs527872	0.95[ASN][1000 genomes]
rs530694	0.82[ASN][1000 genomes]
rs557184	0.95[ASN][1000 genomes]
rs570181	0.95[ASN][1000 genomes]
rs602406	0.85[ASN][1000 genomes]
rs62406773	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62416781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416807	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs629082	0.95[ASN][1000 genomes]
rs634695	0.95[ASN][1000 genomes]
rs635863	0.95[ASN][1000 genomes]
rs6455309	0.86[AMR][1000 genomes]
rs653895	0.95[ASN][1000 genomes]
rs677389	0.95[ASN][1000 genomes]
rs6904267	0.89[ASN][1000 genomes]
rs693242	0.95[ASN][1000 genomes]
rs7741493	0.81[ASN][1000 genomes]
rs7743332	0.81[ASN][1000 genomes]
rs7756040	0.81[ASN][1000 genomes]
rs7756637	0.81[ASN][1000 genomes]
rs7760307	0.89[ASN][1000 genomes]
rs7764479	0.85[ASN][1000 genomes]
rs7767118	0.81[ASN][1000 genomes]
rs779017	0.95[ASN][1000 genomes]
rs947221	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69756400-69769000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69763600-69770200	Weak transcription	Brain Germinal Matrix	brain

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