Variant report

Variant	rs1889879
Chromosome Location	chr6:69663880-69663881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10485436	0.95[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs13207774	0.95[CHD][hapmap];0.86[JPT][hapmap]
rs1932618	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7741961	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs9360367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1889879	C6orf57	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
3	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
4	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
8	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:69655000-69664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69659600-69669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69661400-69665000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:69661800-69665800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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