Variant report

Variant	rs13215030
Chromosome Location	chr6:69648760-69648761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69631911..69634740-chr6:69647956..69650887,2	K562	blood:
2	chr6:69648515..69651430-chr6:69656581..69658381,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008234	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10223798	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10485434	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10485436	0.88[JPT][hapmap]
rs10485437	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1120258	0.82[ASN][1000 genomes]
rs11751644	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11963528	0.89[JPT][hapmap]
rs11967772	0.82[ASN][1000 genomes]
rs13190995	0.95[ASN][1000 genomes]
rs13191427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13195099	0.82[ASN][1000 genomes]
rs13199576	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13201188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13204246	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13207774	0.88[JPT][hapmap]
rs13208434	0.82[ASN][1000 genomes]
rs13210533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13210818	1.00[ASN][1000 genomes]
rs13216650	0.95[ASN][1000 genomes]
rs13217051	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16900333	1.00[ASN][1000 genomes]
rs17200696	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1916767	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1916768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1932615	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2184723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416371	0.82[ASN][1000 genomes]
rs6455307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6936651	0.82[ASN][1000 genomes]
rs7754330	0.82[ASN][1000 genomes]
rs7755226	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7760666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9294813	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9446064	0.97[ASN][1000 genomes]
rs9446067	1.00[ASN][1000 genomes]
rs9454643	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9454645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs996768	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69645200-69653600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
6	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
7	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
8	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69647600-69659200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69647600-69659200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links