Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69517737..69519410-chr6:69526030..69528424,2	K562	blood:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1008234	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs1018436	0.92[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10223798	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs10485434	0.89[JPT][hapmap]
rs10485437	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs11751644	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs13199883	0.84[EUR][1000 genomes]
rs13201188	0.89[JPT][hapmap]
rs13204176	0.86[JPT][hapmap]
rs13204246	0.92[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs13208896	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13210533	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs13215030	0.89[JPT][hapmap]
rs13217051	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs1523933	0.80[EUR][1000 genomes]
rs17200696	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs1916767	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs1916768	0.91[CEU][hapmap];0.89[JPT][hapmap]
rs1932615	0.89[JPT][hapmap]
rs2184723	0.89[JPT][hapmap]
rs62416371	0.80[EUR][1000 genomes]
rs62418573	0.81[EUR][1000 genomes]
rs6455307	0.89[JPT][hapmap]
rs66779956	0.81[EUR][1000 genomes]
rs6936651	0.80[EUR][1000 genomes]
rs7742022	0.81[EUR][1000 genomes]
rs7755226	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs7760666	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs9294813	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs9454643	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs9454645	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs996768	0.92[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69523400-69535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69525400-69528800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69525400-69534600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69525800-69532000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:69527400-69528400	Enhancers	Brain Angular Gyrus	brain
7	chr6:69527400-69528800	Enhancers	Brain Substantia Nigra	brain
8	chr6:69528000-69528400	Enhancers	Fetal Brain Female	brain

Quick Search: