Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1008234	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1018436	0.81[AMR][1000 genomes]
rs10223798	0.88[EUR][1000 genomes]
rs1120258	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11751644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11963528	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967772	0.88[EUR][1000 genomes]
rs13195099	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13199883	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13204246	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13208434	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13217051	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1523933	0.89[EUR][1000 genomes]
rs17200696	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1916767	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62416371	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62418573	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66779956	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6936651	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73458284	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7742022	0.89[EUR][1000 genomes]
rs7754330	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7755226	0.87[EUR][1000 genomes]
rs996768	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69523400-69535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69525400-69534600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69528400-69536200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung

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