Variant report

Variant	rs13199883
Chromosome Location	chr6:69535823-69535824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1008234	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10223798	0.95[EUR][1000 genomes]
rs10485437	0.84[EUR][1000 genomes]
rs1120258	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11751644	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11963528	0.84[EUR][1000 genomes]
rs11967772	0.95[EUR][1000 genomes]
rs13195099	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13199576	0.84[EUR][1000 genomes]
rs13204246	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13208434	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13208896	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13210533	0.84[EUR][1000 genomes]
rs13210818	0.83[EUR][1000 genomes]
rs13217051	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1523933	0.95[EUR][1000 genomes]
rs16900333	0.83[EUR][1000 genomes]
rs17200696	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1916767	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62416371	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62418573	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66779956	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6936651	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73458284	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7742022	0.96[EUR][1000 genomes]
rs7754330	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7755226	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7760666	0.83[EUR][1000 genomes]
rs9294813	0.83[EUR][1000 genomes]
rs9446064	0.82[EUR][1000 genomes]
rs9446067	0.83[EUR][1000 genomes]
rs9454643	0.84[EUR][1000 genomes]
rs9454645	0.83[EUR][1000 genomes]
rs996768	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69528400-69536200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
4	chr6:69535200-69536800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:69535400-69536800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:69535600-69536600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:69535800-69537000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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