Variant report

Variant	rs9454683
Chromosome Location	chr6:69756911-69756912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69753741..69757695-chr6:69762024..69764244,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1007921	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1336651	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1482323	0.90[EUR][1000 genomes]
rs2005033	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2210867	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2785576	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2793459	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3799016	0.80[EUR][1000 genomes]
rs3799017	0.80[EUR][1000 genomes]
rs4554293	0.89[EUR][1000 genomes]
rs484935	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs485864	0.90[EUR][1000 genomes]
rs509043	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs524359	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs526898	0.90[EUR][1000 genomes]
rs527872	0.90[EUR][1000 genomes]
rs530694	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs557184	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs602406	0.81[EUR][1000 genomes]
rs629082	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs634371	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs634695	0.89[EUR][1000 genomes]
rs635863	0.88[EUR][1000 genomes]
rs677389	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6904267	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs693242	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7741493	0.80[EUR][1000 genomes]
rs7743332	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7756040	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7760307	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7764479	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7764626	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7767118	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs779017	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
5	chr6:69756400-69769000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:69756600-69759600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links