Variant report

Variant	rs1336653
Chromosome Location	chr6:69733420-69733421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13207626	0.93[AFR][1000 genomes]
rs1336652	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17481523	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs1912987	0.82[TSI][hapmap]
rs1912988	0.82[TSI][hapmap]
rs2343260	0.82[TSI][hapmap]
rs314208	0.82[YRI][hapmap]
rs314218	0.82[TSI][hapmap]
rs35065230	0.89[EUR][1000 genomes]
rs71555401	0.87[EUR][1000 genomes]
rs764837	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs7739401	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69732600-69733600	Enhancers	HUVEC	blood vessel
9	chr6:69732600-69733600	Enhancers	NHDF-Ad	bronchial
10	chr6:69732600-69733800	Enhancers	NH-A	brain
11	chr6:69732800-69735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:69733200-69733600	Enhancers	Osteobl	bone
13	chr6:69733400-69736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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