Variant report

Variant	rs17481523
Chromosome Location	chr6:69802200-69802201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1336652	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs1336653	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs314194	1.00[AMR][1000 genomes]
rs314208	0.83[YRI][hapmap]
rs314218	0.84[CEU][hapmap]
rs35026522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35065230	0.89[EUR][1000 genomes]
rs67807	0.85[CEU][hapmap]
rs71555401	0.93[EUR][1000 genomes]
rs71557607	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs764837	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69794800-69802800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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