Variant report

Variant	rs1336989
Chromosome Location	chr13:54928409-54928410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17089381	0.96[AMR][1000 genomes]
rs17089389	0.87[EUR][1000 genomes]
rs2039632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56095790	0.96[AMR][1000 genomes]
rs73490507	0.89[AMR][1000 genomes]
rs9591579	0.96[AMR][1000 genomes]
rs9591582	0.96[AMR][1000 genomes]
rs9596946	0.93[AMR][1000 genomes]
rs9596948	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54880000-54929800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:54911000-54928600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:54911800-54928600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:54914800-54930400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:54923600-54928800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:54928200-54930800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:54928400-54930400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:54928400-54930600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:54928400-54930600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:54928400-54930600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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