Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10162244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11839344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1336989	0.82[AMR][1000 genomes]
rs13378144	0.89[EUR][1000 genomes]
rs13378146	1.00[EUR][1000 genomes]
rs17089381	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17089389	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2039632	0.82[AMR][1000 genomes]
rs2818210	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4638450	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001945	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56095790	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490507	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285196	0.83[AMR][1000 genomes]
rs9591578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591579	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591582	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596942	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9596944	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596945	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54880000-54929800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:54892800-54923000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:54904000-54910200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:54905200-54907800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:54905200-54910400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:54905400-54928400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:54907000-54910400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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