Variant report

Variant	rs1337386
Chromosome Location	chr9:16733410-16733411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10116407	0.96[EUR][1000 genomes]
rs10738457	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10756810	0.89[EUR][1000 genomes]
rs10810599	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810600	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810602	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810610	0.80[EUR][1000 genomes]
rs10810614	0.91[EUR][1000 genomes]
rs10810615	0.89[EUR][1000 genomes]
rs10810617	0.82[EUR][1000 genomes]
rs10962556	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10962569	0.91[EUR][1000 genomes]
rs12238070	0.91[EUR][1000 genomes]
rs12344698	0.96[EUR][1000 genomes]
rs1361073	0.84[EUR][1000 genomes]
rs1856132	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999214	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2282072	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5016914	0.84[EUR][1000 genomes]
rs73419969	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855044	0.91[EUR][1000 genomes]
rs7862734	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16728200-16744600	Weak transcription	Fetal Intestine Large	intestine
2	chr9:16728400-16733600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:16728400-16736200	Weak transcription	HSMMtube	muscle
4	chr9:16728400-16743200	Weak transcription	Fetal Kidney	kidney
5	chr9:16728400-16744200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:16728800-16743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16729000-16734400	Weak transcription	NHLF	lung
8	chr9:16729000-16743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16729400-16744400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:16729600-16744200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:16729800-16735600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16729800-16743400	Weak transcription	Osteobl	bone
13	chr9:16730000-16738200	Weak transcription	NH-A	brain
14	chr9:16730000-16744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:16730200-16743400	Weak transcription	Fetal Stomach	stomach
16	chr9:16730200-16748200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16730600-16735200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:16730600-16735400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:16730600-16735400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:16730600-16735400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:16730600-16744400	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:16730800-16734000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:16730800-16734400	Weak transcription	Ovary	ovary
24	chr9:16730800-16734600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:16731200-16735400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr9:16731200-16744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:16732000-16735000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:16732000-16736000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16732600-16733800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr9:16732600-16734000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:16732600-16734200	Enhancers	NHEK	skin
32	chr9:16732800-16734600	Weak transcription	Fetal Lung	lung
33	chr9:16732800-16734800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:16733200-16734400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:16733200-16736000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:16733400-16743800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links