Variant report

Variant	rs10962569
Chromosome Location	chr9:16759197-16759198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116407	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10116469	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10117034	0.84[EUR][1000 genomes]
rs10122189	0.82[AMR][1000 genomes]
rs10122736	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs10122827	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10123118	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738457	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[EUR][1000 genomes]
rs10756810	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810595	0.82[CEU][hapmap]
rs10810599	0.84[EUR][1000 genomes]
rs10810600	0.91[EUR][1000 genomes]
rs10810602	0.89[EUR][1000 genomes]
rs10810610	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs10810614	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810615	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810622	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810626	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10962543	0.87[CEU][hapmap]
rs10962556	0.96[EUR][1000 genomes]
rs10962568	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10962576	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10962588	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962592	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12238070	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341542	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12344698	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12375507	0.87[CEU][hapmap]
rs12377846	0.85[CEU][hapmap]
rs1337386	0.91[EUR][1000 genomes]
rs1361073	1.00[CEU][hapmap]
rs1856132	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs1952688	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1999214	0.96[EUR][1000 genomes]
rs2039185	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2150089	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2282072	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes]
rs28584140	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28626673	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5016914	0.84[EUR][1000 genomes]
rs7024466	0.81[CHB][hapmap]
rs7024720	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73410488	0.84[AMR][1000 genomes]
rs73419969	0.96[EUR][1000 genomes]
rs7855044	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862734	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16774800	Weak transcription	Osteobl	bone
2	chr9:16745600-16766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16754000-16766600	Weak transcription	NHDF-Ad	bronchial
4	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16754400-16767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:16758400-16766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16758600-16769200	Weak transcription	Ovary	ovary

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