Variant report

Variant	rs10810595
Chromosome Location	chr9:16711204-16711205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10116407	1.00[CEU][hapmap]
rs10116469	0.82[CEU][hapmap]
rs10123118	1.00[CEU][hapmap]
rs10738457	0.82[CEU][hapmap]
rs10810610	0.82[CEU][hapmap]
rs10810617	1.00[CEU][hapmap]
rs10962569	0.82[CEU][hapmap]
rs10962576	1.00[CEU][hapmap]
rs10962588	0.82[CEU][hapmap]
rs10962592	1.00[CEU][hapmap]
rs12341542	1.00[CEU][hapmap]
rs12344698	1.00[CEU][hapmap]
rs1361073	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1856132	1.00[CEU][hapmap]
rs2039185	0.82[CEU][hapmap]
rs2150089	1.00[CEU][hapmap]
rs2282072	0.82[CEU][hapmap]
rs7862734	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16705600-16713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:16707400-16712000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:16707800-16713200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:16708000-16711400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:16708000-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:16708200-16713200	Enhancers	A549	lung
7	chr9:16708200-16716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16709000-16711400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr9:16709000-16712000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:16709200-16711800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:16709200-16712600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:16709200-16712800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:16709200-16712800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:16709200-16713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:16709200-16713800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:16709200-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:16709400-16711800	Enhancers	Fetal Brain Male	brain
19	chr9:16709400-16712600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:16709400-16712800	Weak transcription	Ovary	ovary
21	chr9:16709400-16714200	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:16709400-16714400	Weak transcription	Osteobl	bone
23	chr9:16709400-16718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:16709400-16719000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:16709600-16712800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:16709600-16714600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:16709600-16714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:16709600-16714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
30	chr9:16709800-16711600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr9:16710200-16711400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr9:16710200-16711400	Enhancers	Fetal Lung	lung
33	chr9:16710200-16711600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr9:16710400-16711400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr9:16710400-16711400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr9:16710400-16711400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:16710400-16719000	Weak transcription	NH-A	brain
38	chr9:16710600-16711600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:16710800-16711400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:16710800-16711800	Enhancers	HSMM	muscle
41	chr9:16711000-16711400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr9:16711000-16711400	Flanking Active TSS	Fetal Brain Female	brain
43	chr9:16711000-16711400	Enhancers	Fetal Muscle Leg	muscle
44	chr9:16711000-16711400	Enhancers	NHDF-Ad	bronchial
45	chr9:16711000-16712200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:16711000-16714200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr9:16711200-16711400	Active TSS	Psoas Muscle	Psoas
48	chr9:16711200-16711400	Active TSS	HSMMtube	muscle
49	chr9:16711200-16712600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:16711200-16713600	Enhancers	HUES48 Cell Line	embryonic stem cell

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