Variant report

Variant	rs10962592
Chromosome Location	chr9:16787039-16787040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10115109	0.82[EUR][1000 genomes]
rs10116407	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs10116469	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10117034	0.87[EUR][1000 genomes]
rs10119731	1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10120138	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10120562	0.82[ASW][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs10122189	0.89[AMR][1000 genomes]
rs10122736	0.86[CEU][hapmap];0.85[GIH][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10122827	0.85[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10123118	1.00[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10738457	1.00[CEU][hapmap]
rs10756810	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810595	1.00[CEU][hapmap]
rs10810610	1.00[CEU][hapmap]
rs10810614	0.85[EUR][1000 genomes]
rs10810615	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810617	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810622	0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810626	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810635	0.87[YRI][hapmap]
rs10962543	0.87[CEU][hapmap]
rs10962556	0.81[EUR][1000 genomes]
rs10962569	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962576	1.00[CEU][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962588	0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962601	0.81[CHB][hapmap]
rs12238070	0.85[EUR][1000 genomes]
rs12341168	0.82[EUR][1000 genomes]
rs12341542	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.90[EUR][1000 genomes]
rs12344698	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12375507	0.87[CEU][hapmap]
rs12377846	0.85[CEU][hapmap]
rs12380481	0.82[EUR][1000 genomes]
rs1361073	1.00[CEU][hapmap]
rs1856132	1.00[CEU][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs1952688	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1999214	0.81[EUR][1000 genomes]
rs2039185	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2150089	1.00[CEU][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2183406	0.82[EUR][1000 genomes]
rs2183407	0.82[EUR][1000 genomes]
rs2282072	1.00[CEU][hapmap]
rs28584140	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626673	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3927536	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs7024466	0.94[JPT][hapmap]
rs7024720	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73410488	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73419969	0.81[EUR][1000 genomes]
rs7855044	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7862734	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16767600-16795400	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:16768000-16795000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16769800-16787600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16769800-16795400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:16773000-16795000	Weak transcription	HSMMtube	muscle
6	chr9:16774200-16787400	Weak transcription	NH-A	brain
7	chr9:16776000-16787600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:16776200-16787400	Weak transcription	Osteobl	bone
9	chr9:16778400-16787400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:16778800-16787200	Weak transcription	NHDF-Ad	bronchial
11	chr9:16779000-16787200	Weak transcription	Psoas Muscle	Psoas
12	chr9:16782800-16787400	Weak transcription	HUVEC	blood vessel
13	chr9:16783400-16787400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:16784400-16802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:16784600-16787400	Weak transcription	HSMM	muscle
16	chr9:16785000-16792200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:16785200-16794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:16786000-16787600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16786000-16795600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:16786200-16787200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:16786400-16787400	Enhancers	Ovary	ovary
22	chr9:16786600-16787200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:16786600-16787400	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:16786600-16788000	Strong transcription	Fetal Stomach	stomach
25	chr9:16786600-16788200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:16786800-16787200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:16786800-16787200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr9:16786800-16787200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:16786800-16787400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr9:16786800-16787600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr9:16786800-16787600	Strong transcription	NHLF	lung
32	chr9:16787000-16787600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:16787000-16788000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:16787000-16788200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:16787000-16792400	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:16787000-16794600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr9:16787000-16795200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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