Variant report

Variant	rs13374531
Chromosome Location	chr1:174728738-174728739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10218557	0.90[AFR][1000 genomes]
rs58014193	1.00[AMR][1000 genomes]
rs61281388	1.00[AMR][1000 genomes]
rs6666728	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671849	0.90[AFR][1000 genomes]
rs6674318	1.00[AFR][1000 genomes]
rs6703060	0.90[AFR][1000 genomes]
rs73026437	1.00[AMR][1000 genomes]
rs73026469	1.00[AMR][1000 genomes]
rs7537495	1.00[AMR][1000 genomes]
rs7545233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174706000-174730400	Weak transcription	Aorta	Aorta
2	chr1:174706200-174734000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:174711800-174745600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174712400-174735000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:174720200-174733000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:174720200-174739000	Weak transcription	GM12878-XiMat	blood
7	chr1:174722000-174730600	Weak transcription	Small Intestine	intestine
8	chr1:174722600-174729000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:174723200-174739000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:174723400-174728800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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