Variant report

Variant	rs7545233
Chromosome Location	chr1:174710640-174710641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10218557	0.90[AFR][1000 genomes]
rs13374531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58014193	1.00[AMR][1000 genomes]
rs61281388	1.00[AMR][1000 genomes]
rs6666728	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674318	1.00[AFR][1000 genomes]
rs6703060	0.90[AFR][1000 genomes]
rs6704395	1.00[AMR][1000 genomes]
rs73026437	1.00[AMR][1000 genomes]
rs73026469	1.00[AMR][1000 genomes]
rs7537495	1.00[AMR][1000 genomes]
rs7554306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174705800-174712200	Weak transcription	Left Ventricle	heart
2	chr1:174706000-174730400	Weak transcription	Aorta	Aorta
3	chr1:174706200-174734000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:174707200-174715000	Weak transcription	Fetal Heart	heart
5	chr1:174707600-174712200	Weak transcription	Liver	Liver
6	chr1:174708000-174722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:174709200-174711400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:174709200-174713200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:174709400-174711800	Enhancers	Primary B cells from cord blood	blood
10	chr1:174709400-174712600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:174709600-174713400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:174709800-174711800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:174709800-174712000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:174710200-174719800	Weak transcription	GM12878-XiMat	blood
15	chr1:174710400-174711200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:174710600-174711600	Weak transcription	Fetal Intestine Small	intestine
17	chr1:174710600-174712400	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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