Variant report
| Variant | rs13375189 |
|---|---|
| Chromosome Location | chr1:71127433-71127434 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr1:71127186-71127483 | IMR90 | lung: | n/a | chr1:71127318-71127329 |
| 2 | CEBPB | chr1:71127183-71127489 | HepG2 | liver: | n/a | chr1:71127318-71127329 |
| 3 | CEBPB | chr1:71127161-71127461 | K562 | blood: | n/a | chr1:71127318-71127329 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CASP3P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10157447 | 0.92[EUR][1000 genomes] |
| rs13374929 | 0.93[AMR][1000 genomes] |
| rs13375164 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17131393 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17131395 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes] |
| rs7355029 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871024 | chr1:71088106-71169865 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
