Variant report

Variant	rs17131393
Chromosome Location	chr1:71137136-71137137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157447	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13374929	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13375164	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13375189	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131395	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2782803	0.82[MEX][hapmap];1.00[TSI][hapmap]
rs7355029	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung
2	chr1:71132800-71141000	Weak transcription	Gastric	stomach
3	chr1:71133800-71137600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:71133800-71138600	Weak transcription	Aorta	Aorta
5	chr1:71134000-71140600	Weak transcription	Pancreas	Pancrea
6	chr1:71136200-71140400	Weak transcription	Fetal Heart	heart
7	chr1:71136400-71137200	Enhancers	Fetal Stomach	stomach
8	chr1:71136800-71137200	Enhancers	Fetal Muscle Leg	muscle
9	chr1:71136800-71137400	Enhancers	Adipose Nuclei	Adipose
10	chr1:71136800-71138800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:71137000-71137200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:71137000-71139200	Weak transcription	K562	blood
13	chr1:71137000-71140600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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