Variant report

Variant	rs13375835
Chromosome Location	chr1:221643488-221643489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10158337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10159173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13373986	0.83[EUR][1000 genomes]
rs1599086	0.83[EUR][1000 genomes]
rs17010091	0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010165	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553069	0.83[EUR][1000 genomes]
rs6699367	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs74146104	0.83[EUR][1000 genomes]
rs7549150	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9660276	0.83[EUR][1000 genomes]
rs9724647	0.83[EUR][1000 genomes]
rs9724682	0.83[EUR][1000 genomes]
rs9727723	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221636400-221651200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:221641800-221644000	Enhancers	NHDF-Ad	bronchial
3	chr1:221642200-221651200	Weak transcription	HSMM	muscle
4	chr1:221642800-221645000	Enhancers	Hela-S3	cervix
5	chr1:221643000-221643800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:221643000-221644200	Enhancers	NHEK	skin
7	chr1:221643200-221643800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:221643200-221644200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:221643400-221643800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:221643400-221644200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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