Variant report

Variant	rs1599086
Chromosome Location	chr1:221680930-221680931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10158337	0.83[EUR][1000 genomes]
rs10159173	0.83[EUR][1000 genomes]
rs13373986	1.00[EUR][1000 genomes]
rs13375835	0.83[EUR][1000 genomes]
rs17010091	0.83[EUR][1000 genomes]
rs17010163	0.83[EUR][1000 genomes]
rs17010165	0.83[EUR][1000 genomes]
rs61553069	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74144284	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146104	1.00[EUR][1000 genomes]
rs7549150	0.83[EUR][1000 genomes]
rs9660276	1.00[EUR][1000 genomes]
rs9662212	0.89[AFR][1000 genomes]
rs9724647	1.00[EUR][1000 genomes]
rs9724682	1.00[EUR][1000 genomes]
rs9727723	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221678200-221681800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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