Variant report

Variant	rs13375938
Chromosome Location	chr1:159771330-159771331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11585055	0.81[MKK][hapmap]
rs13375409	1.00[AMR][1000 genomes]
rs6666281	1.00[AMR][1000 genomes]
rs6666518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668234	0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs6699933	0.82[MKK][hapmap]
rs73028940	1.00[AMR][1000 genomes]
rs73028941	1.00[AMR][1000 genomes]
rs73030817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159768400-159771400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:159768800-159771400	Enhancers	Thymus	Thymus
3	chr1:159769000-159773200	Weak transcription	Placenta	Placenta
4	chr1:159769800-159774400	Weak transcription	NHDF-Ad	bronchial
5	chr1:159770000-159772000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:159770000-159774000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:159770400-159773600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:159770600-159772200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:159770600-159772800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:159770600-159774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:159770800-159771600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:159770800-159771800	Active TSS	Primary T cells fromperipheralblood	blood
13	chr1:159771000-159771600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:159771000-159776600	Weak transcription	Primary T cells from cord blood	blood
15	chr1:159771200-159771400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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