Variant report

Variant	rs6668234
Chromosome Location	chr1:159773404-159773405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159772577..159773500-chr1:159861032..159861799,2	MCF-7	breast:
2	chr1:159767187..159770392-chr1:159770720..159774821,3	K562	blood:

Variant related genes	Relation type
ENSG00000181036	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13375938	0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs6666281	0.82[AFR][1000 genomes]
rs6666518	1.00[AFR][1000 genomes]
rs73028941	0.82[AFR][1000 genomes]
rs73030817	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159769800-159774400	Weak transcription	NHDF-Ad	bronchial
2	chr1:159770000-159774000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:159770400-159773600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:159770600-159774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:159771000-159776600	Weak transcription	Primary T cells from cord blood	blood
6	chr1:159771400-159773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:159771600-159774600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:159771600-159774600	Enhancers	Spleen	Spleen
9	chr1:159771800-159774000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr1:159772600-159774000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:159772800-159777400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:159772800-159778800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:159773200-159773600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr1:159773200-159773600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:159773200-159774400	Enhancers	Placenta	Placenta
16	chr1:159773400-159773600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:159773400-159773800	Enhancers	HSMMtube	muscle
18	chr1:159773400-159774000	Bivalent Enhancer	Fetal Stomach	stomach
19	chr1:159773400-159774000	Enhancers	Gastric	stomach
20	chr1:159773400-159774000	Enhancers	Lung	lung
21	chr1:159773400-159774400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:159773400-159774800	Enhancers	Right Atrium	heart
23	chr1:159773400-159776800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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