Variant report

Variant	rs13376387
Chromosome Location	chr1:224703493-224703494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13376231	1.00[AFR][1000 genomes]
rs16849654	1.00[CHB][hapmap]
rs55787629	1.00[ASN][1000 genomes]
rs60544953	1.00[AFR][1000 genomes]
rs6659109	1.00[YRI][hapmap]
rs6676481	0.84[ASN][1000 genomes]
rs6683232	0.84[ASN][1000 genomes]
rs6687424	1.00[YRI][hapmap]
rs74146364	1.00[ASN][1000 genomes]
rs74146365	0.92[ASN][1000 genomes]
rs74146366	1.00[ASN][1000 genomes]
rs74146367	1.00[ASN][1000 genomes]
rs74146368	1.00[AFR][1000 genomes]
rs7512165	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224694200-224704000	Weak transcription	Right Atrium	heart
2	chr1:224694200-224717600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:224694200-224727600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:224696400-224716600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:224699200-224704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:224699200-224704600	Weak transcription	HSMM	muscle
7	chr1:224701400-224704200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:224701800-224704000	Weak transcription	K562	blood
9	chr1:224701800-224705400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:224701800-224709200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:224701800-224716600	Weak transcription	Ovary	ovary
12	chr1:224702000-224703600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:224702000-224704200	Weak transcription	NH-A	brain
14	chr1:224702000-224709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:224702000-224716600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:224702200-224716600	Weak transcription	Dnd41	blood
17	chr1:224703200-224707600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:224703400-224703600	Enhancers	Fetal Brain Male	brain
19	chr1:224703400-224711200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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