Variant report

Variant	rs6683232
Chromosome Location	chr1:224695900-224695901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224693369..224695979-chr1:224697952..224700518,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13376231	1.00[EUR][1000 genomes]
rs13376387	0.84[ASN][1000 genomes]
rs55787629	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57898225	1.00[EUR][1000 genomes]
rs59066189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60544953	1.00[EUR][1000 genomes]
rs60976873	1.00[EUR][1000 genomes]
rs61004241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61155218	1.00[EUR][1000 genomes]
rs61479600	1.00[EUR][1000 genomes]
rs6676481	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146364	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74146365	1.00[EUR][1000 genomes]
rs74146366	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74146367	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74146368	1.00[EUR][1000 genomes]
rs7522430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv947162	chr1:224690408-224695941	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224690000-224699400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:224690000-224702000	Enhancers	Liver	Liver
3	chr1:224690200-224697200	Weak transcription	Gastric	stomach
4	chr1:224691800-224698400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:224692000-224696000	Weak transcription	Fetal Kidney	kidney
6	chr1:224692000-224697000	Weak transcription	GM12878-XiMat	blood
7	chr1:224692000-224697400	Weak transcription	Fetal Stomach	stomach
8	chr1:224692000-224697400	Enhancers	HepG2	liver
9	chr1:224692000-224698400	Weak transcription	HSMM	muscle
10	chr1:224692000-224698400	Weak transcription	HSMMtube	muscle
11	chr1:224692000-224701600	Weak transcription	Fetal Lung	lung
12	chr1:224692400-224697800	Weak transcription	Placenta	Placenta
13	chr1:224692400-224701600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:224692600-224697000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:224692600-224697200	Weak transcription	Fetal Thymus	thymus
16	chr1:224692600-224697200	Weak transcription	Stomach Mucosa	stomach
17	chr1:224692600-224697400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:224692600-224698800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:224692600-224700600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:224693000-224697200	Weak transcription	Lung	lung
21	chr1:224693000-224697200	Weak transcription	Dnd41	blood
22	chr1:224693000-224698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:224693200-224697000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:224693200-224697200	Weak transcription	K562	blood
25	chr1:224693400-224696600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr1:224693600-224699200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:224694000-224696400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:224694200-224697200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:224694200-224704000	Weak transcription	Right Atrium	heart
30	chr1:224694200-224717600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:224694200-224727600	Weak transcription	Brain Anterior Caudate	brain
32	chr1:224694400-224697000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:224694400-224697200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:224694400-224697200	Weak transcription	NHLF	lung
35	chr1:224694400-224697400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:224694400-224697800	Weak transcription	Esophagus	oesophagus
37	chr1:224694400-224697800	Weak transcription	Osteobl	bone
38	chr1:224694400-224698400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:224694400-224698400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:224694600-224697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:224694600-224697200	Weak transcription	NHEK	skin
42	chr1:224694600-224697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:224694600-224697800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:224694800-224697000	Weak transcription	Adipose Nuclei	Adipose
45	chr1:224695000-224697000	Weak transcription	Colonic Mucosa	Colon
46	chr1:224695000-224697200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:224695200-224696200	Enhancers	Duodenum Mucosa	Duodenum
48	chr1:224695200-224696200	Enhancers	Fetal Intestine Small	intestine
49	chr1:224695200-224698600	Enhancers	Fetal Intestine Large	intestine
50	chr1:224695200-224699000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links