Variant report

Variant	rs61155218
Chromosome Location	chr1:224687369-224687370
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224622043..224623637-chr1:224687364..224688891,2	MCF-7	breast:
2	chr1:224674487..224677087-chr1:224685810..224687371,2	K562	blood:
3	chr1:224683423..224687942-chr1:224688283..224691740,8	K562	blood:

Variant related genes	Relation type
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13376231	1.00[EUR][1000 genomes]
rs55787629	1.00[EUR][1000 genomes]
rs57898225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59066189	1.00[EUR][1000 genomes]
rs60544953	1.00[EUR][1000 genomes]
rs60976873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61004241	1.00[EUR][1000 genomes]
rs61479600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676481	1.00[EUR][1000 genomes]
rs6683232	1.00[EUR][1000 genomes]
rs74146364	1.00[EUR][1000 genomes]
rs74146365	1.00[EUR][1000 genomes]
rs74146366	1.00[EUR][1000 genomes]
rs74146367	1.00[EUR][1000 genomes]
rs74146368	1.00[EUR][1000 genomes]
rs7522430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224679800-224689600	Weak transcription	Pancreas	Pancrea
2	chr1:224682800-224690200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:224685200-224687400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:224685200-224687400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:224685200-224687400	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:224685200-224687400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:224685200-224687400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:224685200-224687800	Enhancers	Brain Anterior Caudate	brain
9	chr1:224685200-224688600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:224685200-224695800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:224685400-224687400	Enhancers	HSMMtube	muscle
12	chr1:224685600-224687400	Enhancers	Brain Substantia Nigra	brain
13	chr1:224685600-224689600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:224685800-224687400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:224686000-224687400	Enhancers	K562	blood
16	chr1:224686000-224689600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:224686000-224690000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:224686200-224689000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:224686400-224689600	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:224686600-224687400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:224686600-224687400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:224686600-224687400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:224686600-224687400	Enhancers	GM12878-XiMat	blood
24	chr1:224686600-224688400	Weak transcription	Primary T cells from cord blood	blood
25	chr1:224686600-224688400	Enhancers	Dnd41	blood
26	chr1:224686600-224688800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr1:224686600-224688800	Enhancers	NHLF	lung
28	chr1:224686600-224689600	Weak transcription	Esophagus	oesophagus
29	chr1:224686600-224689800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr1:224686600-224689800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:224686600-224689800	Weak transcription	Fetal Lung	lung
32	chr1:224686600-224689800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:224686600-224690000	Weak transcription	Aorta	Aorta
34	chr1:224686600-224690000	Weak transcription	Liver	Liver
35	chr1:224686600-224690200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr1:224686600-224690200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:224686600-224691000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:224686600-224691000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:224686600-224691200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr1:224686600-224691200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:224686800-224687400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr1:224686800-224687400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr1:224686800-224687400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr1:224686800-224687400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:224686800-224687400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr1:224686800-224687400	Enhancers	Hela-S3	cervix
47	chr1:224686800-224687400	Enhancers	HSMM	muscle
48	chr1:224686800-224687600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:224686800-224687600	Enhancers	HUVEC	blood vessel
50	chr1:224686800-224687600	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links