Variant report

Variant	rs13378202
Chromosome Location	chr13:38438580-38438581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13378266	1.00[AFR][1000 genomes]
rs13378430	1.00[AFR][1000 genomes]
rs7329061	1.00[AFR][1000 genomes]
rs9315516	0.81[AFR][1000 genomes]
rs9594237	1.00[AFR][1000 genomes]
rs9603264	0.81[AFR][1000 genomes]
rs9603265	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38433800-38439000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:38435800-38439400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:38436000-38440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:38436400-38441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:38436400-38442200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:38437000-38438800	Weak transcription	Osteobl	bone
7	chr13:38437600-38439200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:38437800-38439000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:38437800-38439000	Enhancers	Colon Smooth Muscle	Colon
10	chr13:38438000-38442400	Weak transcription	Ovary	ovary
11	chr13:38438200-38438800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:38438400-38441400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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