Variant report

Variant	rs9603264
Chromosome Location	chr13:38409416-38409417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10047798	1.00[AMR][1000 genomes]
rs12323057	1.00[AMR][1000 genomes]
rs13378202	0.81[AFR][1000 genomes]
rs13378266	0.81[AFR][1000 genomes]
rs13378430	0.81[AFR][1000 genomes]
rs28804677	1.00[AMR][1000 genomes]
rs7329061	0.81[AFR][1000 genomes]
rs7332646	1.00[AMR][1000 genomes]
rs9315516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594237	0.81[AFR][1000 genomes]
rs9603261	1.00[AMR][1000 genomes]
rs9603265	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38399600-38411000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:38402000-38418600	Weak transcription	Ovary	ovary
3	chr13:38403000-38411000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:38403000-38421400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:38409400-38409800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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