Variant report

Variant	rs13378487
Chromosome Location	chr13:30292921-30292922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12853894	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12854608	0.87[EUR][1000 genomes]
rs12864282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12865724	0.94[EUR][1000 genomes]
rs12866411	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12868072	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12872620	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12872872	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12877965	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34117941	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34148142	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34220342	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34492142	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34973257	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227498	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35566813	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35569918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35809262	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35820783	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71427278	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427279	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427280	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434744	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71434746	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434747	0.81[AFR][1000 genomes]
rs7320198	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7986326	0.94[EUR][1000 genomes]
rs7991247	1.00[YRI][hapmap]
rs9314968	0.94[EUR][1000 genomes]
rs9578112	1.00[YRI][hapmap]
rs9578114	1.00[YRI][hapmap]
rs9578127	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9578128	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9578130	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9578131	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9578133	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9578134	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579417	1.00[YRI][hapmap]
rs9579418	1.00[YRI][hapmap]
rs9579419	1.00[YRI][hapmap]
rs9579424	1.00[YRI][hapmap]
rs9579428	1.00[YRI][hapmap]
rs9579440	1.00[YRI][hapmap]
rs9579457	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9579459	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9579462	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9579463	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9579464	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9579465	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9579466	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579469	0.87[EUR][1000 genomes]
rs9579470	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9579472	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30292200-30293400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:30292200-30294000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:30292200-30295000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:30292400-30293400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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