Variant report

Variant	rs9579424
Chromosome Location	chr13:30177800-30177801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30165714..30171776-chr13:30177525..30182462,8	MCF-7	breast:
2	chr13:30168257..30172909-chr13:30176540..30182360,8	MCF-7	breast:
3	chr13:30166989..30170198-chr13:30177666..30179924,3	K562	blood:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10220050	1.00[ASN][1000 genomes]
rs10220112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492457	1.00[ASN][1000 genomes]
rs12853894	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12864282	1.00[ASN][1000 genomes]
rs12865724	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12866411	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12868072	1.00[ASN][1000 genomes]
rs12872620	1.00[ASN][1000 genomes]
rs12872872	1.00[ASN][1000 genomes]
rs12873674	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12877965	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13378570	1.00[ASN][1000 genomes]
rs2036973	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2669038	1.00[ASN][1000 genomes]
rs3011607	1.00[ASN][1000 genomes]
rs34117941	1.00[ASN][1000 genomes]
rs34148142	1.00[ASN][1000 genomes]
rs34220342	1.00[ASN][1000 genomes]
rs34492142	1.00[ASN][1000 genomes]
rs34967062	1.00[ASN][1000 genomes]
rs34973257	1.00[ASN][1000 genomes]
rs34978805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35033033	1.00[ASN][1000 genomes]
rs35227498	1.00[ASN][1000 genomes]
rs35566813	1.00[ASN][1000 genomes]
rs35569918	1.00[ASN][1000 genomes]
rs35809262	1.00[ASN][1000 genomes]
rs35820783	1.00[ASN][1000 genomes]
rs35901321	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs478085	1.00[ASN][1000 genomes]
rs555913	1.00[ASN][1000 genomes]
rs71427274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71427278	1.00[ASN][1000 genomes]
rs71427279	1.00[ASN][1000 genomes]
rs71427280	1.00[ASN][1000 genomes]
rs71434735	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71434744	1.00[ASN][1000 genomes]
rs71434746	1.00[ASN][1000 genomes]
rs7320198	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73454227	1.00[ASN][1000 genomes]
rs74042085	1.00[ASN][1000 genomes]
rs7986326	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7991247	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992028	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992839	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998704	1.00[ASN][1000 genomes]
rs9314960	1.00[ASN][1000 genomes]
rs9314961	1.00[ASN][1000 genomes]
rs9314962	1.00[ASN][1000 genomes]
rs9314964	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9314968	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578108	1.00[ASN][1000 genomes]
rs9578110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578112	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578114	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9578118	1.00[ASN][1000 genomes]
rs9578121	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578122	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578123	1.00[ASN][1000 genomes]
rs9578125	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578127	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578128	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9578130	1.00[ASN][1000 genomes]
rs9578131	1.00[ASN][1000 genomes]
rs9578133	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9578134	1.00[ASN][1000 genomes]
rs9579405	1.00[ASN][1000 genomes]
rs9579406	1.00[ASN][1000 genomes]
rs9579407	1.00[ASN][1000 genomes]
rs9579408	1.00[ASN][1000 genomes]
rs9579410	1.00[ASN][1000 genomes]
rs9579411	1.00[ASN][1000 genomes]
rs9579413	1.00[ASN][1000 genomes]
rs9579414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579417	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579418	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579419	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579425	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579428	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579439	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9579440	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9579442	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579445	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579446	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579447	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579449	0.85[AFR][1000 genomes]
rs9579451	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579454	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579455	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579457	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579459	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579462	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579463	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9579464	1.00[ASN][1000 genomes]
rs9579465	1.00[ASN][1000 genomes]
rs9579466	1.00[ASN][1000 genomes]
rs9579468	1.00[ASN][1000 genomes]
rs9579470	1.00[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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