Variant report

Variant	rs9579449
Chromosome Location	chr13:30241048-30241049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12853894	0.85[AFR][1000 genomes]
rs12865724	1.00[AFR][1000 genomes]
rs12866411	0.85[AFR][1000 genomes]
rs12872620	0.85[AFR][1000 genomes]
rs12872872	0.85[AFR][1000 genomes]
rs12873674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12877965	0.85[AFR][1000 genomes]
rs34117941	0.85[AFR][1000 genomes]
rs34492142	0.85[AFR][1000 genomes]
rs34978805	0.85[AFR][1000 genomes]
rs35033033	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227498	0.85[AFR][1000 genomes]
rs35566813	0.85[AFR][1000 genomes]
rs35569918	0.85[AFR][1000 genomes]
rs35587642	0.92[AFR][1000 genomes]
rs35809262	0.85[AFR][1000 genomes]
rs35901321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427274	0.85[AFR][1000 genomes]
rs71427279	0.85[AFR][1000 genomes]
rs71427280	0.85[AFR][1000 genomes]
rs71434735	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71434746	0.85[AFR][1000 genomes]
rs71434747	0.85[AFR][1000 genomes]
rs7320198	1.00[AFR][1000 genomes]
rs7986326	1.00[AFR][1000 genomes]
rs7991247	0.85[AFR][1000 genomes]
rs7991463	0.85[AFR][1000 genomes]
rs9314964	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9314968	1.00[AFR][1000 genomes]
rs9578110	0.85[AFR][1000 genomes]
rs9578112	0.85[AFR][1000 genomes]
rs9578118	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9578121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9578122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9578125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9578127	1.00[AFR][1000 genomes]
rs9578128	1.00[AFR][1000 genomes]
rs9578133	0.85[AFR][1000 genomes]
rs9579414	0.85[AFR][1000 genomes]
rs9579417	0.85[AFR][1000 genomes]
rs9579418	0.85[AFR][1000 genomes]
rs9579419	0.85[AFR][1000 genomes]
rs9579424	0.85[AFR][1000 genomes]
rs9579428	0.85[AFR][1000 genomes]
rs9579439	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9579440	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579442	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579457	1.00[AFR][1000 genomes]
rs9579459	1.00[AFR][1000 genomes]
rs9579462	1.00[AFR][1000 genomes]
rs9579463	1.00[AFR][1000 genomes]
rs9579466	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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