The 2.0 version of rSNPBase

Variant report

Variant rs34978805
Chromosome Location chr13:30166886-30166887
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30128800-30168200 Weak transcription Primary T cells from cord blood blood
2 chr13:30148400-30167400 Weak transcription Primary B cells from peripheral blood blood
3 chr13:30152600-30168200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr13:30156400-30168400 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr13:30156800-30168200 Weak transcription Fetal Brain Female brain
6 chr13:30156800-30168400 Weak transcription Brain Inferior Temporal Lobe brain
7 chr13:30157200-30168400 Weak transcription Brain Germinal Matrix brain
8 chr13:30157600-30168200 Weak transcription Duodenum Mucosa Duodenum
9 chr13:30157600-30168200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr13:30157800-30168200 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr13:30157800-30168400 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr13:30157800-30168400 Weak transcription Small Intestine intestine
13 chr13:30157800-30168600 Weak transcription Ovary ovary
14 chr13:30158000-30168600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr13:30158200-30168400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr13:30159400-30168200 Weak transcription Brain Angular Gyrus brain
17 chr13:30160000-30167400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr13:30160000-30168400 Weak transcription Psoas Muscle Psoas
19 chr13:30160200-30167000 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr13:30161400-30167400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr13:30162000-30168400 Weak transcription Aorta Aorta
22 chr13:30162200-30168400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr13:30162600-30167200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr13:30162600-30167800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr13:30162600-30168200 Weak transcription Primary B cells from cord blood blood
26 chr13:30162600-30168200 Weak transcription Primary hematopoietic stem cells blood
27 chr13:30163000-30167600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr13:30163000-30167800 Enhancers NHDF-Ad bronchial
29 chr13:30163200-30167600 Enhancers Pancreas Pancrea
30 chr13:30164000-30168000 Enhancers Primary T helper cells fromperipheralblood blood
31 chr13:30164000-30168400 Weak transcription Fetal Stomach stomach
32 chr13:30164000-30168600 Weak transcription Right Atrium heart
33 chr13:30164000-30168600 Weak transcription Thymus Thymus
34 chr13:30164200-30167200 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr13:30164400-30167000 Weak transcription Left Ventricle heart
36 chr13:30164400-30167200 Genic enhancers Breast Myoepithelial Primary Cells Breast
37 chr13:30164400-30167200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr13:30164400-30168200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr13:30164400-30168200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr13:30164400-30168400 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr13:30164400-30168400 Weak transcription Brain Hippocampus Middle brain
42 chr13:30164400-30168400 Weak transcription Fetal Muscle Trunk muscle
43 chr13:30164400-30168600 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr13:30164600-30167200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr13:30164600-30167800 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr13:30164600-30168000 Weak transcription Fetal Brain Male brain
47 chr13:30164600-30168200 Weak transcription Colon Smooth Muscle Colon
48 chr13:30164800-30167000 Weak transcription Spleen Spleen
49 chr13:30164800-30167400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr13:30164800-30168200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015