Variant report
| Variant | rs9578123 |
|---|---|
| Chromosome Location | chr13:30234829-30234830 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:98)
| rs_ID | r2[population] |
|---|---|
| rs10220050 | 1.00[ASN][1000 genomes] |
| rs10220112 | 1.00[ASN][1000 genomes] |
| rs10492457 | 1.00[ASN][1000 genomes] |
| rs12853894 | 1.00[ASN][1000 genomes] |
| rs12864282 | 1.00[ASN][1000 genomes] |
| rs12865724 | 1.00[ASN][1000 genomes] |
| rs12866411 | 1.00[ASN][1000 genomes] |
| rs12868072 | 1.00[ASN][1000 genomes] |
| rs12872620 | 1.00[ASN][1000 genomes] |
| rs12872872 | 1.00[ASN][1000 genomes] |
| rs12873674 | 1.00[ASN][1000 genomes] |
| rs12877965 | 1.00[ASN][1000 genomes] |
| rs13378570 | 1.00[ASN][1000 genomes] |
| rs17587218 | 1.00[ASN][1000 genomes] |
| rs2036973 | 1.00[ASN][1000 genomes] |
| rs2669038 | 1.00[ASN][1000 genomes] |
| rs3011607 | 1.00[ASN][1000 genomes] |
| rs34117941 | 1.00[ASN][1000 genomes] |
| rs34148142 | 1.00[ASN][1000 genomes] |
| rs34220342 | 1.00[ASN][1000 genomes] |
| rs34492142 | 1.00[ASN][1000 genomes] |
| rs34967062 | 1.00[ASN][1000 genomes] |
| rs34973257 | 1.00[ASN][1000 genomes] |
| rs34978805 | 1.00[ASN][1000 genomes] |
| rs35033033 | 1.00[ASN][1000 genomes] |
| rs35227498 | 1.00[ASN][1000 genomes] |
| rs35566813 | 1.00[ASN][1000 genomes] |
| rs35569918 | 1.00[ASN][1000 genomes] |
| rs35809262 | 1.00[ASN][1000 genomes] |
| rs35820783 | 1.00[ASN][1000 genomes] |
| rs35901321 | 1.00[ASN][1000 genomes] |
| rs478085 | 1.00[ASN][1000 genomes] |
| rs555913 | 1.00[ASN][1000 genomes] |
| rs71427274 | 1.00[ASN][1000 genomes] |
| rs71427278 | 1.00[ASN][1000 genomes] |
| rs71427279 | 1.00[ASN][1000 genomes] |
| rs71427280 | 1.00[ASN][1000 genomes] |
| rs71434735 | 1.00[ASN][1000 genomes] |
| rs71434744 | 1.00[ASN][1000 genomes] |
| rs71434746 | 1.00[ASN][1000 genomes] |
| rs7320198 | 1.00[ASN][1000 genomes] |
| rs73454227 | 1.00[ASN][1000 genomes] |
| rs7986326 | 1.00[ASN][1000 genomes] |
| rs7991247 | 1.00[ASN][1000 genomes] |
| rs7991463 | 1.00[ASN][1000 genomes] |
| rs7992028 | 1.00[ASN][1000 genomes] |
| rs7992839 | 1.00[ASN][1000 genomes] |
| rs7998704 | 1.00[ASN][1000 genomes] |
| rs9314960 | 1.00[ASN][1000 genomes] |
| rs9314961 | 1.00[ASN][1000 genomes] |
| rs9314962 | 1.00[ASN][1000 genomes] |
| rs9314964 | 1.00[ASN][1000 genomes] |
| rs9314968 | 1.00[ASN][1000 genomes] |
| rs9578108 | 1.00[ASN][1000 genomes] |
| rs9578110 | 1.00[ASN][1000 genomes] |
| rs9578112 | 1.00[ASN][1000 genomes] |
| rs9578118 | 1.00[ASN][1000 genomes] |
| rs9578121 | 1.00[ASN][1000 genomes] |
| rs9578122 | 1.00[ASN][1000 genomes] |
| rs9578125 | 1.00[ASN][1000 genomes] |
| rs9578127 | 1.00[ASN][1000 genomes] |
| rs9578128 | 1.00[ASN][1000 genomes] |
| rs9578130 | 1.00[ASN][1000 genomes] |
| rs9578131 | 1.00[ASN][1000 genomes] |
| rs9578133 | 1.00[ASN][1000 genomes] |
| rs9578134 | 1.00[ASN][1000 genomes] |
| rs9579405 | 1.00[ASN][1000 genomes] |
| rs9579406 | 1.00[ASN][1000 genomes] |
| rs9579407 | 1.00[ASN][1000 genomes] |
| rs9579408 | 1.00[ASN][1000 genomes] |
| rs9579410 | 1.00[ASN][1000 genomes] |
| rs9579411 | 1.00[ASN][1000 genomes] |
| rs9579413 | 1.00[ASN][1000 genomes] |
| rs9579414 | 1.00[ASN][1000 genomes] |
| rs9579417 | 1.00[ASN][1000 genomes] |
| rs9579418 | 1.00[ASN][1000 genomes] |
| rs9579419 | 1.00[ASN][1000 genomes] |
| rs9579424 | 1.00[ASN][1000 genomes] |
| rs9579425 | 1.00[ASN][1000 genomes] |
| rs9579428 | 1.00[ASN][1000 genomes] |
| rs9579439 | 1.00[ASN][1000 genomes] |
| rs9579440 | 1.00[ASN][1000 genomes] |
| rs9579442 | 1.00[ASN][1000 genomes] |
| rs9579445 | 1.00[ASN][1000 genomes] |
| rs9579446 | 1.00[ASN][1000 genomes] |
| rs9579447 | 1.00[ASN][1000 genomes] |
| rs9579451 | 1.00[ASN][1000 genomes] |
| rs9579454 | 1.00[ASN][1000 genomes] |
| rs9579455 | 1.00[ASN][1000 genomes] |
| rs9579457 | 1.00[ASN][1000 genomes] |
| rs9579459 | 1.00[ASN][1000 genomes] |
| rs9579462 | 1.00[ASN][1000 genomes] |
| rs9579463 | 1.00[ASN][1000 genomes] |
| rs9579464 | 1.00[ASN][1000 genomes] |
| rs9579465 | 1.00[ASN][1000 genomes] |
| rs9579466 | 1.00[ASN][1000 genomes] |
| rs9579468 | 1.00[ASN][1000 genomes] |
| rs9579470 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv980 | chr13:30200197-30236915 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv510577 | chr13:30213612-30254316 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv899961 | chr13:30226924-30407273 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:30233600-30238200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr13:30233800-30249800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
