Variant report

Variant	rs7992028
Chromosome Location	chr13:30180115-30180116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30165714..30171776-chr13:30177525..30182462,8	MCF-7	breast:
2	chr13:30168257..30172909-chr13:30176540..30182360,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10220050	1.00[ASN][1000 genomes]
rs10220112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492457	1.00[ASN][1000 genomes]
rs12853894	1.00[ASN][1000 genomes]
rs12864282	1.00[ASN][1000 genomes]
rs12865724	1.00[ASN][1000 genomes]
rs12866411	1.00[ASN][1000 genomes]
rs12868072	1.00[ASN][1000 genomes]
rs12872620	1.00[ASN][1000 genomes]
rs12872872	1.00[ASN][1000 genomes]
rs12873674	1.00[ASN][1000 genomes]
rs12877965	1.00[ASN][1000 genomes]
rs13378570	1.00[ASN][1000 genomes]
rs17587218	1.00[ASN][1000 genomes]
rs2036973	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036974	0.90[YRI][hapmap]
rs2669038	1.00[ASN][1000 genomes]
rs3011607	1.00[ASN][1000 genomes]
rs34117941	1.00[ASN][1000 genomes]
rs34148142	1.00[ASN][1000 genomes]
rs34220342	1.00[ASN][1000 genomes]
rs34492142	1.00[ASN][1000 genomes]
rs34967062	1.00[ASN][1000 genomes]
rs34973257	1.00[ASN][1000 genomes]
rs34978805	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35033033	1.00[ASN][1000 genomes]
rs35227498	1.00[ASN][1000 genomes]
rs35566813	1.00[ASN][1000 genomes]
rs35569918	1.00[ASN][1000 genomes]
rs35809262	1.00[ASN][1000 genomes]
rs35820783	1.00[ASN][1000 genomes]
rs35901321	1.00[ASN][1000 genomes]
rs478085	1.00[ASN][1000 genomes]
rs555913	1.00[ASN][1000 genomes]
rs71427274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71427278	1.00[ASN][1000 genomes]
rs71427279	1.00[ASN][1000 genomes]
rs71427280	1.00[ASN][1000 genomes]
rs71434735	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71434744	1.00[ASN][1000 genomes]
rs71434746	1.00[ASN][1000 genomes]
rs7320198	1.00[ASN][1000 genomes]
rs73454227	1.00[ASN][1000 genomes]
rs74042085	1.00[ASN][1000 genomes]
rs7986326	1.00[ASN][1000 genomes]
rs7990747	0.90[YRI][hapmap]
rs7991247	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991463	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992839	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998704	1.00[ASN][1000 genomes]
rs9314960	1.00[ASN][1000 genomes]
rs9314961	1.00[ASN][1000 genomes]
rs9314962	1.00[ASN][1000 genomes]
rs9314964	1.00[ASN][1000 genomes]
rs9314968	1.00[ASN][1000 genomes]
rs9578108	1.00[ASN][1000 genomes]
rs9578110	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578112	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578114	1.00[CEU][hapmap]
rs9578118	1.00[ASN][1000 genomes]
rs9578121	1.00[ASN][1000 genomes]
rs9578122	1.00[ASN][1000 genomes]
rs9578123	1.00[ASN][1000 genomes]
rs9578125	1.00[ASN][1000 genomes]
rs9578127	1.00[ASN][1000 genomes]
rs9578128	1.00[ASN][1000 genomes]
rs9578130	1.00[ASN][1000 genomes]
rs9578131	1.00[ASN][1000 genomes]
rs9578133	1.00[ASN][1000 genomes]
rs9578134	1.00[ASN][1000 genomes]
rs9579405	1.00[ASN][1000 genomes]
rs9579406	1.00[ASN][1000 genomes]
rs9579407	1.00[ASN][1000 genomes]
rs9579408	1.00[ASN][1000 genomes]
rs9579410	1.00[ASN][1000 genomes]
rs9579411	1.00[ASN][1000 genomes]
rs9579413	1.00[ASN][1000 genomes]
rs9579414	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579417	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579418	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579419	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579424	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579425	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579428	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579439	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9579440	1.00[ASN][1000 genomes]
rs9579442	1.00[ASN][1000 genomes]
rs9579445	1.00[ASN][1000 genomes]
rs9579446	1.00[ASN][1000 genomes]
rs9579447	1.00[ASN][1000 genomes]
rs9579451	1.00[ASN][1000 genomes]
rs9579454	1.00[ASN][1000 genomes]
rs9579455	1.00[ASN][1000 genomes]
rs9579457	1.00[ASN][1000 genomes]
rs9579459	1.00[ASN][1000 genomes]
rs9579462	1.00[ASN][1000 genomes]
rs9579463	1.00[ASN][1000 genomes]
rs9579464	1.00[ASN][1000 genomes]
rs9579465	1.00[ASN][1000 genomes]
rs9579466	1.00[ASN][1000 genomes]
rs9579468	1.00[ASN][1000 genomes]
rs9579470	1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30178600-30181600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:30179800-30181000	Enhancers	Left Ventricle	heart
3	chr13:30180000-30181000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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