Variant report

Variant	rs35587642
Chromosome Location	chr13:30263463-30263464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12853894	0.92[AFR][1000 genomes]
rs12864282	0.85[AFR][1000 genomes]
rs12865724	0.92[AFR][1000 genomes]
rs12866411	0.92[AFR][1000 genomes]
rs12868072	0.85[AFR][1000 genomes]
rs12872620	0.92[AFR][1000 genomes]
rs12872872	0.92[AFR][1000 genomes]
rs12873674	0.92[AFR][1000 genomes]
rs12877965	0.92[AFR][1000 genomes]
rs34117941	0.92[AFR][1000 genomes]
rs34492142	0.92[AFR][1000 genomes]
rs35033033	0.85[AFR][1000 genomes]
rs35227498	0.92[AFR][1000 genomes]
rs35566813	0.92[AFR][1000 genomes]
rs35569918	0.92[AFR][1000 genomes]
rs35809262	0.92[AFR][1000 genomes]
rs35901321	0.92[AFR][1000 genomes]
rs71427279	0.92[AFR][1000 genomes]
rs71427280	0.92[AFR][1000 genomes]
rs71434746	0.92[AFR][1000 genomes]
rs71434747	0.92[AFR][1000 genomes]
rs7320198	0.92[AFR][1000 genomes]
rs7986326	0.92[AFR][1000 genomes]
rs9314968	0.92[AFR][1000 genomes]
rs9578121	0.92[AFR][1000 genomes]
rs9578122	0.92[AFR][1000 genomes]
rs9578125	0.92[AFR][1000 genomes]
rs9578127	0.92[AFR][1000 genomes]
rs9578128	0.92[AFR][1000 genomes]
rs9578133	0.92[AFR][1000 genomes]
rs9578134	0.85[AFR][1000 genomes]
rs9579440	0.85[AFR][1000 genomes]
rs9579442	0.92[AFR][1000 genomes]
rs9579445	0.92[AFR][1000 genomes]
rs9579446	0.92[AFR][1000 genomes]
rs9579447	0.92[AFR][1000 genomes]
rs9579449	0.92[AFR][1000 genomes]
rs9579451	0.92[AFR][1000 genomes]
rs9579454	0.92[AFR][1000 genomes]
rs9579455	0.92[AFR][1000 genomes]
rs9579457	0.92[AFR][1000 genomes]
rs9579459	0.92[AFR][1000 genomes]
rs9579462	0.92[AFR][1000 genomes]
rs9579463	0.92[AFR][1000 genomes]
rs9579466	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30259800-30263600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:30262400-30267800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:30263400-30264000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr13:30263400-30266200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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