Variant report

Variant	rs13379617
Chromosome Location	chr15:56395418-56395419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56393395..56396114-chr15:56404185..56407853,3	MCF-7	breast:
2	chr15:56389724..56392498-chr15:56393728..56396342,2	K562	blood:
3	chr15:56389724..56392748-chr15:56393728..56397126,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101968	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13329272	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs13380064	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16976757	0.83[ASN][1000 genomes]
rs2682018	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2718931	0.80[YRI][hapmap]
rs28404413	0.91[ASN][1000 genomes]
rs28583563	0.91[ASN][1000 genomes]
rs28594302	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28637684	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28808273	0.83[ASN][1000 genomes]
rs9920255	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9920938	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56381600-56397000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:56382200-56399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56382800-56395800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:56383200-56395600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:56383800-56398400	Strong transcription	Dnd41	blood
6	chr15:56384000-56395800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:56385600-56405600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:56386400-56397400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:56386600-56396200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:56387400-56396000	Weak transcription	Fetal Heart	heart
11	chr15:56388400-56402000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:56388800-56396000	Weak transcription	Colonic Mucosa	Colon
13	chr15:56388800-56396200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:56388800-56396400	Weak transcription	Gastric	stomach
15	chr15:56388800-56396400	Weak transcription	Right Ventricle	heart
16	chr15:56388800-56396600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:56388800-56397400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:56388800-56398400	Weak transcription	Esophagus	oesophagus
19	chr15:56388800-56399000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:56388800-56399200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:56388800-56400600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:56388800-56403400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:56388800-56411600	Weak transcription	Fetal Stomach	stomach
24	chr15:56388800-56414400	Weak transcription	Thymus	Thymus
25	chr15:56388800-56418400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
28	chr15:56388800-56441600	Weak transcription	Lung	lung
29	chr15:56389000-56397200	Weak transcription	Hela-S3	cervix
30	chr15:56389000-56398400	Weak transcription	K562	blood
31	chr15:56389200-56396600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:56389400-56395600	Weak transcription	Brain Germinal Matrix	brain
33	chr15:56389400-56397200	Weak transcription	Fetal Kidney	kidney
34	chr15:56389400-56407600	Weak transcription	Brain Substantia Nigra	brain
35	chr15:56389400-56418400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:56389400-56418400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:56389600-56395600	Weak transcription	Brain Anterior Caudate	brain
38	chr15:56389600-56402000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:56389600-56414400	Weak transcription	HSMMtube	muscle
40	chr15:56389800-56415600	Weak transcription	Placenta	Placenta
41	chr15:56390000-56405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:56390000-56405600	Weak transcription	Fetal Intestine Small	intestine
43	chr15:56390200-56397200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:56390400-56395800	Weak transcription	Brain Angular Gyrus	brain
45	chr15:56390400-56398200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:56390400-56414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:56390600-56395600	Weak transcription	HSMM	muscle
48	chr15:56390600-56395800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:56390600-56396800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:56390600-56396800	Weak transcription	Fetal Muscle Leg	muscle

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